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Commits on Aug 26, 2026
add app
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Add authors and affiliations to CITATION.cff
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Update README to remove obsolete scripts
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Update README.md
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Update README with project details
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Mark CLI scripts as executable
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Refactor lint workflow in tests.yml for clarity
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Refactor GitHub Actions workflow for linting and testing
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Update CI lint job in tests.yml
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Rename test_stereology.p to test_stereology.py
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Add tests for 3D active-nematic focus model
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Add tests for 3D-to-2D defect stereology
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Fix newline at end of file in run_timelapse.py
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Add 3D active-nematic model in focus3d.py
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Add stereology module for 3D defect analysis
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Fix help string formatting and add newline at EOF
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Update tests.yml to include new simulations and Ruff check
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Bump version from 0.2.0 to 0.3.0
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Release version 0.3.0 with new features and updates
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Optimize null event pairing in pair_events function
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Revise flow map generation details in CHANGELOG
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Implement tests for collective flow and flow summary
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Add script to generate flow maps for gels
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Add collective flow estimation and summary functions
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Commits on Aug 25, 2026
Update CHANGELOG with new features and changes
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Implement video input tests and axis bias checks
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Add pair_events function and related tests
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Enhance --frames argument to support MP4 files
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Update optional dependencies in pyproject.toml
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Implement video frame reading and analysis functions
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Enhance documentation and clarify metrics in tracking.py
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Update tracking.py
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Enhance detection parameters and add stability analysis
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Add unit tests for track_defects function
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Add max_gap parameter to track_defects function
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