origin reference fixes

Author: kortdriessen

README.md

@@ -18,7 +18,7 @@ a Quarto site: run `quarto preview docs` for the nicely rendered, searchable ver
 
 ## Install
 
-Download the latest build from the [**Releases**](https://github.com/kortdriessen/flux/releases)
+Download the latest build from the [**Releases**](https://github.com/fluxsci/flux/releases)
 page, then follow the steps for your platform.
 
 ### macOS
@@ -113,7 +113,7 @@ curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.40.1/install.sh | bash
 **1 · Clone the repo**
 
 ```sh
-git clone https://github.com/kortdriessen/flux.git
+git clone https://github.com/fluxsci/flux.git
 cd flux
 ```
 
@@ -269,7 +269,7 @@ ships an in-repo `AGENTS.md`.
 
 ## Related
 
-- [**fluxplot**](https://github.com/kortdriessen/fluxplot) — the companion Python
+- [**fluxplot**](https://github.com/fluxsci/fluxplot) — the companion Python
   library that emits _semantic_ SVG plots (with `*.fluxplot.json` sidecars) that
   Flux imports as fully editable figures.
 

docs/concepts/semantic-plots.qmd

@@ -4,7 +4,7 @@ subtitle: "Why plots stay live inside Flux — the fluxplot contract"
 ---
 
 Most tools treat a saved plot as a picture. Flux treats it as a **structure**: when a plot is
-made with [fluxplot](https://github.com/kortdriessen/fluxplot), every meaningful part of it — a
+made with [fluxplot](https://github.com/fluxsci/fluxplot), every meaningful part of it — a
 series' line, its 4th data point, the x-axis title — carries a **stable name**. That one idea is
 what makes Flux figures feel alive:
 

docs/installation.qmd

@@ -23,7 +23,7 @@ no such friction.
 ## From source
 
 ```bash
-git clone https://github.com/kortdriessen/flux ~/flux
+git clone https://github.com/fluxsci/flux ~/flux
 cd ~/flux
 npm ci                     # needs Node ≥ 22.12 (see below)
 npm run dist:mac           # or dist:linux → installers in release/
@@ -68,7 +68,7 @@ fluxplot as a dependency).
 
 ```bash
 curl -LsSf https://astral.sh/uv/install.sh | sh          # install uv
-git clone https://github.com/kortdriessen/fluxplot ~/fluxplot   # fluxplot lives HERE
+git clone https://github.com/fluxsci/fluxplot ~/fluxplot   # fluxplot lives HERE
 ```
 
 **fluxplot must be cloned to `~/fluxplot`** — that's the conventional location agents

electron-builder.yml

@@ -1,4 +1,4 @@
-appId: com.kortdriessen.flux
+appId: com.fluxsci.flux
 productName: Flux
 copyright: © 2026 Kort Driessen
 
@@ -85,6 +85,6 @@ dmg:
 
 publish:
   provider: github
-  owner: kortdriessen
+  owner: fluxsci
   repo: flux
   releaseType: draft

electron/fluxContextDocs.gen.cjs

@@ -882,8 +882,8 @@ ipcMain.handle("slidelib:delete", (_e, rel) => {
 // daily throttle (prefs.lastUpdateCheck), and the fetch (no renderer CORS/UA
 // issues). Best-effort — any failure resolves to null (never nags, never errors).
 // ---------------------------------------------------------------------------
-const RELEASES_API = "https://api.github.com/repos/kortdriessen/flux/releases/latest";
-const RELEASES_PAGE = "https://github.com/kortdriessen/flux/releases/latest";
+const RELEASES_API = "https://api.github.com/repos/fluxsci/flux/releases/latest";
+const RELEASES_PAGE = "https://github.com/fluxsci/flux/releases/latest";
 const UPDATE_THROTTLE_MS = 24 * 60 * 60 * 1000;
 
 ipcMain.handle("update:check", async () => {

electron/main.cjs

@@ -19,7 +19,7 @@ import { lightEntry } from "../src/lib/references/bibtex";
 import { identify, reconcile, type PaperMeta, type SearchHit, type IdResult, type IdentifyDeps } from "../src/lib/references/pdfIdentify";
 import { searchWorld } from "./enrich";
 
-const UA = "Flux/0.1 (pdf assign; +https://github.com/kortdriessen/flux)";
+const UA = "Flux/0.1 (pdf assign; +https://github.com/fluxsci/flux)";
 /** Politeness gap between successive DOI resolutions (Crossref/doi.org are limiter-exempt). */
 const RESOLVE_GAP_MS = 200;
 /** This many consecutive transient (network) results aborts the scan — we're offline. */

flux-core/assign.ts

@@ -35,7 +35,7 @@ import {
   getSecret,
 } from "./fluxlib";
 
-const UA = "Flux/0.1 (reference hydration; +https://github.com/kortdriessen/flux)";
+const UA = "Flux/0.1 (reference hydration; +https://github.com/fluxsci/flux)";
 const sleep = (ms: number) => new Promise((r) => setTimeout(r, ms));
 
 /* eslint-disable @typescript-eslint/no-explicit-any */

flux-core/enrich.ts

@@ -10,7 +10,7 @@
     "email": "sleepanimal@gmail.com"
   },
   "license": "MIT",
-  "homepage": "https://github.com/kortdriessen/flux",
+  "homepage": "https://github.com/fluxsci/flux",
   "bin": {
     "flux": "dist/flux-cli.mjs"
   },

package.json

@@ -26,7 +26,7 @@ uv run python analysis/make_plots.py   # run everything through uv
 - **fluxplot lives at `~/fluxplot`** (a local clone — it's an editable path dependency,
   in `pyproject.toml` via uv's sources). If it is NOT there, either ask the user to
   clone it or clone it yourself:
-  `git clone https://github.com/kortdriessen/fluxplot ~/fluxplot`.
+  `git clone https://github.com/fluxsci/fluxplot ~/fluxplot`.
 - Every plotting script then follows `PLOTS-AND-STYLE.md` (house style, named series,
   `fp.save` with a recipe into the Flux project's `plots/`).