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@Huber-group-EMBL EMBL Huber Group

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    35 repositories

    • Rarr

      Public
      A simple and performant native R reader & writer for Zarr Arrays
      rbioconductorr-package
      rbioconductorr-packageout-of-memoryon-diskzarrome-zarrome-ngff
      R
      •
      Other
      •11•55•19•4•Updated Oct 27, 2026Oct 27, 2026

    • DEXSeq

      Public
      Inference of differential exon usage in RNA-Seq
      R
      •6•10•9•0•Updated Oct 26, 2026Oct 26, 2026

    • biomaRt

      Public
      R package providing query functionality to BioMart instances like Ensembl
      rensemblbioconductor
      rensemblbioconductorbiomart
      R
      •18•52•39•1•Updated Oct 20, 2026Oct 20, 2026

    • remart

      Public
      Reimplementation of the 'biomaRt' Package Using Modern Ensembl APIs
      R
      •
      Other
      •0•8•7•2•Updated Oct 15, 2026Oct 15, 2026

    • rhdf5

      Public
      Package providing an interface between HDF5 and R
      rhdf5bioconductor
      rhdf5bioconductorr-packagerhdf5
      R
      •22•74•31•4•Updated Oct 6, 2026Oct 6, 2026

    • romeo

      Public
      A minimal multiscale OME-Zarr reader for R
      R
      •
      Other
      •1•7•8•2•Updated Oct 6, 2026Oct 6, 2026

    • vsn

      Public
      Variance stabilization and calibration for microarray data
      R
      •1•0•0•0•Updated Sep 23, 2026Sep 23, 2026

    • Huber-group-EMBL.r-universe.dev

      Public
      R-universe for R packages developed or maintained by members of the Huber group at EMBL
      0•0•0•0•Updated Aug 20, 2026Aug 20, 2026

    • Hiiragi2013

      Public
      Hiiragi2013 Bioconductor package
      R
      •0•0•0•0•Updated Aug 20, 2026Aug 20, 2026

    • HD2013SGI

      Public
      R
      •0•0•0•0•Updated Aug 20, 2026Aug 20, 2026

    • davidTiling

      Public
      Mirror of the Bioc davidTiling package
      R
      •0•0•0•0•Updated Aug 18, 2026Aug 18, 2026

    • rhdf5filters

      Public
      Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external a…
      compressionhdf5filter-plugin
      compressionhdf5filter-pluginrpackage
      C
      •
      Other
      •6•5•0•1•Updated Aug 7, 2026Aug 7, 2026

    • EBImage

      Public
      :art: Image processing toolbox for R
      R
      •29•0•0•0•Updated Jun 30, 2026Jun 30, 2026

    • Rhdf5lib

      Public
      Distribution of the HDF5 library in an R package
      hdf5bioconductorhdf5-library
      hdf5bioconductorhdf5-library
      R
      •14•7•11•1•Updated Jun 16, 2026Jun 16, 2026

    • spatialdata_schemas

      Public
      JSON schemas for SpatialData data format
      0•1•0•0•Updated Jun 2, 2026Jun 2, 2026

    • arrayQualityMetrics

      Public
      Quality metrics report for microarray data sets
      bioconductorr-package
      bioconductorr-package
      R
      •1•1•1•0•Updated Apr 28, 2026Apr 28, 2026

    • SpatialData.validate

      Public
      Validate SpatialData objects
      R
      •
      Other
      •1•2•3•2•Updated Apr 28, 2026Apr 28, 2026

    • Brillouin-validation

      Public
      Validation of Brillouin standard file format (`.brim`)
      Python
      •0•0•1•1•Updated Jan 30, 2026Jan 30, 2026

    • Huber-group-EMBL.github.io

      Public archive
      Huber group public webpage
      TeX
      •
      Other
      •24•3•0•0•Updated Dec 17, 2025Dec 17, 2025

    • CSAMA-website-2023

      Public
      Website for CSAMA
      CSS
      •
      MIT License
      •6•0•0•1•Updated Jul 30, 2025Jul 30, 2025

    • lpsymphony

      Public
      C++
      •5•0•0•1•Updated Apr 8, 2025Apr 8, 2025

    • mofaCLL

      Public
      R
      •
      GNU General Public License v3.0
      •3•6•0•0•Updated Nov 27, 2024Nov 27, 2024

    • UBDS3-2024

      Public
      Teaching material for the Ukrainian Biological Data Science Summer School 2024
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Jul 22, 2024Jul 22, 2024

    • CITEseqLN-Tcells

      Public
      Multimodal profiling of T-cells in nodal B-cell lymphoma
      t-cellslymphoma
      t-cellslymphoma
      R
      •
      GNU General Public License v3.0
      •5•9•1•0•Updated Jan 18, 2024Jan 18, 2024

    • EMBL-Career-Analysis

      Public
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Aug 22, 2023Aug 22, 2023

    • BDS3

      Public
      Biological Data Science
      HTML
      •
      Mozilla Public License 2.0
      •1•2•0•0•Updated Aug 10, 2023Aug 10, 2023

    • NPARC

      Public
      Nonparametric Analysis of Response Curves from Thermal Proteome Profiling Experiments
      R
      •2•13•0•0•Updated May 8, 2023May 8, 2023

    • DepInfeR

      Public
      DepInfeR is an R package for a computational method that integrates two experimentally accessible input data matrices:\n the drug sensitivity profiles of cance…
      R
      •1•2•0•0•Updated Apr 4, 2023Apr 4, 2023

    • CLLCytokineScreen2021

      Public
      R
      •0•3•0•0•Updated Mar 20, 2023Mar 20, 2023

    • DepInfeR_workflow

      Public
      R
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Jan 11, 2022Jan 11, 2022
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