Repositories list

• data

  Public

  PHI-base/data’s past year of commit activity
  Archives of PHI-base data releases, and other data.

  Python

  •

  Creative Commons Attribution 4.0 International

  •77 forks in PHI-base/data•77 stars in PHI-base/data•66 issues in PHI-base/data•00 pull requests in PHI-base/data•Updated Oct 25, 2026Oct 25, 2026

• phibase-pipeline

  Public

  PHI-base/phibase-pipeline’s past year of commit activity
  Pipeline for releasing data from PHI-base version 5

  Python

  •

  MIT License

  •11 fork in PHI-base/phibase-pipeline•00 stars in PHI-base/phibase-pipeline•00 issues in PHI-base/phibase-pipeline•00 pull requests in PHI-base/phibase-pipeline•Updated Oct 25, 2026Oct 25, 2026

• phipo

  Public

  PHI-base/phipo’s past year of commit activity
  Pathogen-Host Interaction Phenotype Ontology

  ontologyobofoundry

  ontologyobofoundry

  Makefile

  •

  Other

  •55 forks in PHI-base/phipo•55 stars in PHI-base/phipo•3939 issues in PHI-base/phipo•00 pull requests in PHI-base/phipo•Updated Oct 21, 2026Oct 21, 2026

• canto-config

  Public

  PHI-base/canto-config’s past year of commit activity
  Configuration and other files for PHI-Canto

  Shell

  •

  MIT License

  •00 forks in PHI-base/canto-config•00 stars in PHI-base/canto-config•00 issues in PHI-base/canto-config•00 pull requests in PHI-base/canto-config•Updated Oct 21, 2026Oct 21, 2026

• phi-weaver

  Public

  PHI-base/phi-weaver’s past year of commit activity
  Vault to semi-automate PHI-Canto-Curation supervised by biocurator

  Python

  •

  MIT License

  •00 forks in PHI-base/phi-weaver•11 star in PHI-base/phi-weaver•44 issues in PHI-base/phi-weaver•00 pull requests in PHI-base/phi-weaver•Updated Sep 17, 2026Sep 17, 2026

• phi4api-webpages

  Public

  PHI-base/phi4api-webpages’s past year of commit activity
  website

  JavaScript

  •11 fork in PHI-base/phi4api-webpages•00 stars in PHI-base/phi4api-webpages•00 issues in PHI-base/phi4api-webpages•00 pull requests in PHI-base/phi4api-webpages•Updated Sep 3, 2026Sep 3, 2026

• phi-explorer

  Public

  PHI-base/phi-explorer’s past year of commit activity
  PHI-base 5 data mining toolkit for statistics, exploration, filtering, and generation of targeted datasets

  Python

  •

  MIT License

  •00 forks in PHI-base/phi-explorer•00 stars in PHI-base/phi-explorer•00 issues in PHI-base/phi-explorer•00 pull requests in PHI-base/phi-explorer•Updated Aug 29, 2026Aug 29, 2026

• wheat-leaf-image-text-biocuration

  Public

  PHI-base/wheat-leaf-image-text-biocuration’s past year of commit activity
  Curator-supervised image-text learning for wheat disease phenotype biocuration from published leaf assay images and captions.

  Python

  •

  MIT License

  •00 forks in PHI-base/wheat-leaf-image-text-biocuration•00 stars in PHI-base/wheat-leaf-image-text-biocuration•00 issues in PHI-base/wheat-leaf-image-text-biocuration•00 pull requests in PHI-base/wheat-leaf-image-text-biocuration•Updated Aug 11, 2026Aug 11, 2026

• phi-eco

  Public

  PHI-base/phi-eco’s past year of commit activity
  The PHI-base experimental conditions ontology

  Shell

  •

  Other

  •00 forks in PHI-base/phi-eco•11 star in PHI-base/phi-eco•22 issues in PHI-base/phi-eco•00 pull requests in PHI-base/phi-eco•Updated Jun 16, 2026Jun 16, 2026

• phido

  Public

  PHI-base/phido’s past year of commit activity
  The PHI-base disease list

  Batchfile

  •

  Other

  •11 fork in PHI-base/phido•00 stars in PHI-base/phido•00 issues in PHI-base/phido•00 pull requests in PHI-base/phido•Updated Apr 24, 2026Apr 24, 2026

• phi4pipeline

  Public

  PHI-base/phi4pipeline’s past year of commit activity
  Pipeline for creating release formats of PHI-base 4 datasets

  Python

  •

  MIT License

  •00 forks in PHI-base/phi4pipeline•00 stars in PHI-base/phi4pipeline•00 issues in PHI-base/phi4pipeline•00 pull requests in PHI-base/phi4pipeline•Updated Mar 6, 2026Mar 6, 2026

• phipo-patterns

  Public

  PHI-base/phipo-patterns’s past year of commit activity
  Mapping between PHIPO terms and phenotype design patterns

  Python

  •

  MIT License

  •00 forks in PHI-base/phipo-patterns•00 stars in PHI-base/phipo-patterns•00 issues in PHI-base/phipo-patterns•00 pull requests in PHI-base/phipo-patterns•Updated Sep 24, 2025Sep 24, 2025

• phipo_ext

  Public

  PHI-base/phipo_ext’s past year of commit activity
  PHIPO Extension Ontology

  Shell

  •

  Creative Commons Attribution 4.0 International

  •00 forks in PHI-base/phipo_ext•00 stars in PHI-base/phipo_ext•00 issues in PHI-base/phipo_ext•00 pull requests in PHI-base/phipo_ext•Updated Jul 14, 2025Jul 14, 2025

• FunCat

  Public

  PHI-base/FunCat’s past year of commit activity
  Functional categorisation of PHI-base proteins

  Jupyter Notebook

  •

  MIT License

  •00 forks in PHI-base/FunCat•00 stars in PHI-base/FunCat•00 issues in PHI-base/FunCat•00 pull requests in PHI-base/FunCat•Updated Sep 7, 2024Sep 7, 2024

• canto-docs

  Public

  PHI-base/canto-docs’s past year of commit activity
  User documentation for the PHI-Canto project

  Python

  •

  MIT License

  •00 forks in PHI-base/canto-docs•00 stars in PHI-base/canto-docs•1313 issues in PHI-base/canto-docs•00 pull requests in PHI-base/canto-docs•Updated Jun 12, 2023Jun 12, 2023

• canto

  Public

  PHI-base/canto’s past year of commit activity
  The pathogen-host interaction community annotation tool

  JavaScript

  •

  Other

  •88 forks in PHI-base/canto•11 star in PHI-base/canto•00 issues in PHI-base/canto•00 pull requests in PHI-base/canto•Updated Jun 12, 2023Jun 12, 2023

• phi-nets

  Public

  PHI-base/phi-nets’s past year of commit activity
  Protein-Protein interaction network scripts

  Java

  •

  MIT License

  •22 forks in PHI-base/phi-nets•11 star in PHI-base/phi-nets•00 issues in PHI-base/phi-nets•22 pull requests in PHI-base/phi-nets•Updated Aug 2, 2021Aug 2, 2021

• PHI5_web_display

  Public

  PHI-base/PHI5_web_display’s past year of commit activity
  PHI5_web_display will allow to display PHI-Canto data

  HTML

  •00 forks in PHI-base/PHI5_web_display•11 star in PHI-base/PHI5_web_display•33 issues in PHI-base/PHI5_web_display•00 pull requests in PHI-base/PHI5_web_display•Updated Jun 27, 2020Jun 27, 2020

• odk-vagrant

  Public

  PHI-base/odk-vagrant’s past year of commit activity
  Vagrant setup for using the Ontology Development Kit on Windows

  Shell

  •

  GNU General Public License v3.0

  •00 forks in PHI-base/odk-vagrant•11 star in PHI-base/odk-vagrant•00 issues in PHI-base/odk-vagrant•00 pull requests in PHI-base/odk-vagrant•Updated Apr 2, 2019Apr 2, 2019

• phi4api-parser

  Public

  PHI-base/phi4api-parser’s past year of commit activity
  Java

  •00 forks in PHI-base/phi4api-parser•00 stars in PHI-base/phi4api-parser•00 issues in PHI-base/phi4api-parser•00 pull requests in PHI-base/phi4api-parser•Updated Jan 11, 2018Jan 11, 2018

• phi-blast

  Public

  PHI-base/phi-blast’s past year of commit activity
  PHI-base BLAST server

  phi-blast

  phi-blast

  Ruby

  •

  GNU Affero General Public License v3.0

  •00 forks in PHI-base/phi-blast•11 star in PHI-base/phi-blast•00 issues in PHI-base/phi-blast•00 pull requests in PHI-base/phi-blast•Updated Nov 25, 2017Nov 25, 2017

• curation

  Public

  PHI-base/curation’s past year of commit activity
  PHI-base curation

  trackercuration

  trackercuration

  00 forks in PHI-base/curation•00 stars in PHI-base/curation•4141 issues in PHI-base/curation•00 pull requests in PHI-base/curation•Updated Jun 22, 2017Jun 22, 2017

• phibaseAlistairIrvine-parser

  Public archive

  PHI-base/phibaseAlistairIrvine-parser’s past year of commit activity
  Parses the curated PHI-base spreadsheet, validates, then copies the data into the postgreSQL database

  Web Ontology Language

  •00 forks in PHI-base/phibaseAlistairIrvine-parser•00 stars in PHI-base/phibaseAlistairIrvine-parser•00 issues in PHI-base/phibaseAlistairIrvine-parser•00 pull requests in PHI-base/phibaseAlistairIrvine-parser•Updated Feb 4, 2016Feb 4, 2016

• ensembl_mapping

  Public

  PHI-base/ensembl_mapping’s past year of commit activity
  Scripts for mapping PHI-base data to Ensembl Genomes

  00 forks in PHI-base/ensembl_mapping•00 stars in PHI-base/ensembl_mapping•00 issues in PHI-base/ensembl_mapping•00 pull requests in PHI-base/ensembl_mapping•Updated Feb 4, 2016Feb 4, 2016

• fasta-parsing

  Public
  scripts and data to generate FASTA files

  R

  •

  GNU General Public License v3.0

  •11 fork in PHI-base/fasta-parsing•00 stars in PHI-base/fasta-parsing•00 issues in PHI-base/fasta-parsing•00 pull requests in PHI-base/fasta-parsing•Updated Jan 20, 2016Jan 20, 2016

• phi4-parser_no-api

  Public archive
  Loads the PHI-base 4 spreadsheet data into the MySQL database

  Java

  •00 forks in PHI-base/phi4-parser_no-api•00 stars in PHI-base/phi4-parser_no-api•00 issues in PHI-base/phi4-parser_no-api•00 pull requests in PHI-base/phi4-parser_no-api•Updated Mar 31, 2015Mar 31, 2015