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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1+ ### PomBase Application Programming Interface (API)
2+ <!-- pombase_flags: frontpage -->
3+ <!-- newsfeed_thumbnail: japonicusdb-32x32.png -->
4+
5+ [ ![ API diagram] ( assets/newsfeed/2026-08-13-pombase-api-small.png ) {.screenshot .newsfeed-inline-thumbnail loading="lazy" width=20%}] ( assets/newsfeed/2026-08-13-pombase-api-small.png )
6+
7+ JaponicusDB now has an [ API] ( https://en.wikipedia.org/wiki/API ) for
8+ programmatic access to * S. japonicus* data. The following data
9+ types can be retrieved by ID using the API:
10+
11+ - gene details
12+ - GO annotation (by gene ID or term ID)
13+ - Phenotype / genotype annotation (by gene or term ID)
14+
15+ An ID mapping tool is also available to convert:
16+
17+ - cerevisiae, human or * S. pombe* gene IDs to * japonicus* IDs via orthologs
18+ - UniProtKB accessions (e.g. "O60150") to * japonicus* IDs
19+
20+ [ API documentation and examples] ( /documentation/api ) <img src =" /assets/info_icon.svg " style =" width : 1em " />
Original file line number Diff line number Diff line change 55[ ![ API diagram] ( assets/newsfeed/2026-08-13-pombase-api-small.png ) {.screenshot .newsfeed-inline-thumbnail loading="lazy" width=20%}] ( assets/newsfeed/2026-08-13-pombase-api-small.png )
66
77PomBase now has an [ API] ( https://en.wikipedia.org/wiki/API ) for
8- programmatic access to the latest pombe data. The following data
8+ programmatic access to the latest * S. pombe* data. The following data
99types can be retrieved by ID using the API:
1010
1111 - gene details
@@ -14,8 +14,8 @@ types can be retrieved by ID using the API:
1414
1515An ID mapping tool is also available to convert:
1616
17- - cerevisiae, human or S. japonicus gene IDs to pombe IDs via orthologs
18- - UniProtKB accessions (e.g. "O60150") to pombe IDs
17+ - cerevisiae, human or * S. japonicus* gene IDs to * pombe* IDs via orthologs
18+ - UniProtKB accessions (e.g. "O60150") to * pombe* IDs
1919
2020[ API documentation and examples] ( /documentation/api ) <img src =" /assets/info_icon.svg " style =" width : 1em " />
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