Python client for the Open Targets REST API at targetvalidation.org
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Aug 22, 2025 - Python
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opentargets
Here are 25 public repositories matching this topic...
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
enrichment genomics drug-discovery drug-repurposing proteomics omics transcriptomics opentargets enrichment-analysis enrichr targets omics-data
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Jun 4, 2026 - Python
MCP server for Open Targets data
bioinformatics genomics mcp drug-discovery opentargets biomedical-data open-targets model-context-protocol mcp-server
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Oct 9, 2026 - Python
Code for the data processing pipeline
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Jun 21, 2021 - Python
Agent execution layer for biology workflows: batch gene scanning, tumor cohort briefing, target discovery — with structured outputs, resume, and pipeline-ready artifacts
nodejs agent cli bioinformatics typescript genomics cbioportal cancer-genomics uniprot ncbi opentargets batch-pipeline ai-agent tumor-genomics llm-tools claude-code agent-first drug-target
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Aug 26, 2026 - TypeScript
Connecting AI to biomedical data
bioinformatics mcp drug-discovery mygene opentargets mychem biomedical-research monarch-initiative ai-agent model-context-protocol mydisease
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Oct 6, 2026 - Python
AI Agent wrappers for Life Sciences APIs (Open Targets, ChEMBL, UniProt). Accelerating drug discovery with Model Context Protocol (MCP) and FastMCP.
python bioinformatics mcp computational-biology drug-discovery clinical-trials uniprot opentargets ai-agents chembl model-context-protocol mcp-server fastmcp claude-code
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Oct 15, 2026 - Python
Assess the evolution over time of evidence supporting disease-target associations in the Open Targets Platform.
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Oct 20, 2025 - Python
High-level feature tracker for all of Open Targets
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Sep 19, 2019
💊 MediPharma — AI-driven drug discovery. ChEMBL 2.4M compounds, OpenTargets, ADMET prediction.
open-source biostatistics drug-discovery opentargets chembl clinical-trial-design digital-twin lead-optimization pharmaceutical-ai admet-prediction ai-pharma target-screening compound-generation
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Aug 9, 2026 - Python
A comprehensive bioinformatics pipeline for downloading and analyzing genes associated with specific phenotypes from multiple biological databases. This package provides both R scripts for gene retrieval and Python analysis tools for downstream analysis.
bioinformatics r genomics computational-biology gtex phenotypes uniprot opentargets kegg reactome disgenet disease-gene-association hpo omim gene-prioritization literature-mining string-db phenotype-to-gene
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Sep 25, 2026 - R
A reproducible source-aware pipeline for integrating, harmonising, deduplicating, and analysing drug–disease relationships from 11 public biomedical databases, with processed data available on Zenodo.
bioinformatics computational-biology drug-repurposing opentargets drugcentral chembl drug-disease-associations
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Oct 24, 2026 - Python
A GNN-based platform for predicting novel drug-target interactions to accelerate R&D.
gene-expression drug-discovery drug-repurposing pubchem signaling-pathways opentargets neo4j-graph chembl rag pytorch-geometric gnn pytorch-gnn heterogeneous-graph-transformer pharmaceutical-research string-db biogpt4 biochemical-feasibility ligand-to-protein
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Jun 12, 2026 - TypeScript
This repository contains a fully reproducible pipeline for prioritising candidate genes and pathways from GWAS summary statistics using integrative pGWAS functional annotation to identify the most compelling targets for asthma
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Sep 8, 2025 - R
Agent-ready CLI for Open Targets data
python graphql cli bioinformatics genomics genetics drug-discovery opentargets codex ai-agent claude-code
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Oct 6, 2026 - Python
Medical AI agent orchestration framework built on Harness Theory with pluggable LLMs + MCP tools for clinical diagnosis, drug discovery, and health management.
mcp pubmed multi-agent drug-discovery opentargets ai-agents clinical-decision-support differential-diagnosis agent-orchestration openclaw
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Jun 3, 2026 - Python
Open Targets Platform REST API
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Jun 9, 2026 - TypeScript
omnilab/opentargets: Open Targets Platform source for glitchr/omnilab - targets, diseases (EFO, Mondo, HPO, Orphanet) and drugs; associations with scores, drugs and clinical candidates as related things; search
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Oct 27, 2026 - PHP
Unofficial community-maintained Python client for the Open Targets Platform GraphQL API
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Jun 21, 2026 - Python
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