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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 8.9k 2.5k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.2k 231

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 228 21

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 268 80

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 153 43

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 658 123

Repositories

Showing 10 of 128 repositories
  • nnUNet Public
    MIC-DKFZ/nnUNet's past year of commit activity
    Python 8,908 Apache-2.0 2,489 71 24 Updated Sep 24, 2026
  • LongiSeg Public
    MIC-DKFZ/LongiSeg's past year of commit activity
    Python 57 Apache-2.0 7 0 0 Updated Sep 24, 2026
  • nnssl Public
    MIC-DKFZ/nnssl's past year of commit activity
    Python 184 CC-BY-SA-4.0 27 9 3 Updated Sep 24, 2026
  • nnInteractive Public

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/nnInteractive's past year of commit activity
    Python 496 Apache-2.0 59 13 0 Updated Sep 23, 2026
  • batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    MIC-DKFZ/batchgenerators's past year of commit activity
    Jupyter Notebook 1,173 Apache-2.0 231 39 15 Updated Sep 22, 2026
  • MIC-DKFZ/LongiTrack-napari's past year of commit activity
    Python 6 Apache-2.0 0 0 0 Updated Sep 22, 2026
  • MIC-DKFZ/LongiTrack-backend's past year of commit activity
    Python 6 Apache-2.0 0 0 0 Updated Sep 22, 2026
  • napari-nninteractive Public

    nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/napari-nninteractive's past year of commit activity
    Python 123 Apache-2.0 19 15 3 Updated Sep 21, 2026
  • VoxTell Public

    Free-Text Promptable Universal 3D Medical Image Segmentation

    MIC-DKFZ/VoxTell's past year of commit activity
    Python 267 Apache-2.0 29 2 0 Updated Sep 21, 2026
  • nnunet-eucaim-docker Public

    This repository provides Docker images for running nnUNet inference in a reproducible and containerized environment, tailored for the EUCAIM project.

    MIC-DKFZ/nnunet-eucaim-docker's past year of commit activity
    Dockerfile 0 Apache-2.0 1 0 0 Updated Sep 21, 2026