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Tracy: basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

Tracy is available as a Bioconda package, a Homebrew formula, a Singularity container or as a minimal Docker container.

Source Code

Web Applications

Documentation

Citation

Rausch, T., Fritz, M.H., Untergasser, A. and Benes, V.
Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files.
BMC Genomics 21, 230 (2020).
https://doi.org/10.1186/s12864-020-6635-8

License

The BSD 3-Clause license. Consult the accompanying LICENSE file for more details.

Credits

HTSlib for all genomic alignment and variant processing. Boost and SDSL for various data structures and algorithms. Claude for bug fixes, performance improvements, and code suggestions.