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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    HTML 840 165

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 180 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 363 64

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 199 43

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 719 115

Repositories

Showing 10 of 399 repositories
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend's past year of commit activity
    TypeScript 1 Apache-2.0 3 1 14 Updated Sep 24, 2026
  • pic-sure Public

    PIC-SURE API

    hms-dbmi/pic-sure's past year of commit activity
    Java 6 Apache-2.0 5 0 13 Updated Sep 24, 2026
  • i2b2v2-webclient Public

    Harvard Catalyst group's working repo

    hms-dbmi/i2b2v2-webclient's past year of commit activity
    JavaScript 2 6 0 3 Updated Sep 24, 2026
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control's past year of commit activity
    1 Apache-2.0 9 0 0 Updated Sep 24, 2026
  • udi-yac Public

    Monorepo containing front-end/back-end code for the UDI visualization language and YAC chat interface.

    hms-dbmi/udi-yac's past year of commit activity
    Python 4 MIT 2 57 15 Updated Sep 24, 2026
  • pic-sure-all-in-one Public
    hms-dbmi/pic-sure-all-in-one's past year of commit activity
    Shell 4 Apache-2.0 12 0 3 Updated Sep 24, 2026
  • avillachlab-jenkins Public
    hms-dbmi/avillachlab-jenkins's past year of commit activity
    Shell 5 Apache-2.0 7 0 2 Updated Sep 24, 2026
  • pic-sure-bdc-infrastructure Public
    hms-dbmi/pic-sure-bdc-infrastructure's past year of commit activity
    HCL 5 Apache-2.0 2 0 4 Updated Sep 24, 2026
  • pic-sure-r-adapter-hpds Public

    Adapter library for PIC-SURE HPDS Resources (in R language)

    hms-dbmi/pic-sure-r-adapter-hpds's past year of commit activity
    R 2 Apache-2.0 3 0 1 Updated Sep 24, 2026
  • pic-sure-python-adapter-hpds Public

    A Python client library for PIC-SURE-HPDS resources

    hms-dbmi/pic-sure-python-adapter-hpds's past year of commit activity
    Python 0 Apache-2.0 2 0 1 Updated Sep 24, 2026
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