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    31 repositories

    • stimpack

      Public
      modular framework for precise multisensory stimulus generation in systems neuroscience
      pythonneurosciencevirtual-reality
      pythonneurosciencevirtual-realitypsychophysicsauditory-stimulationsystems-neuroscienceclosed-loop-experimentsvisual-stimulation
      Python
      •
      GNU General Public License v3.0
      •2•8•7•0•Updated Sep 27, 2026Sep 27, 2026

    • brainsss

      Public
      Preprocessing of volumetric neural data on sherlock (motion correction, zscoring, etc)
      Jupyter Notebook
      •5•5•2•2•Updated Sep 25, 2026Sep 25, 2026

    • visanalysis

      Public
      Analysis environment for visprotocol imaging experiments
      Python
      •
      MIT License
      •1•2•0•0•Updated Sep 16, 2026Sep 16, 2026

    • brukerbridge

      Public
      Python
      •0•0•3•0•Updated Aug 25, 2026Aug 25, 2026

    • labpack-template

      Public template
      Lab-specific stimuli, config, and resources to be used with stimpack
      Python
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Aug 15, 2026Aug 15, 2026

    • flyvr

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • bifrost

      Public
      Template building and multi-modal registration
      Python
      •
      MIT License
      •7•9•2•0•Updated Oct 10, 2025Oct 10, 2025

    • antspy-binary-mirror

      Public
      mirror of antspy 0.3.2 binary, no longer available on PyP
      Apache License 2.0
      •0•0•0•0•Updated Oct 10, 2025Oct 10, 2025

    • sleep-analysis

      Public
      Library for analyzing Drosophila Activity Monitor data
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Jul 29, 2025Jul 29, 2025

    • flystim

      Public
      Visual stimulus generator for neuroscience experiments
      pythonvirtual-realityscientific-computing
      pythonvirtual-realityscientific-computingvisual-stimulineuroscience-methodsthree-dimensional
      Python
      •
      MIT License
      •2•5•6•0•Updated Jan 15, 2025Jan 15, 2025

    • visprotocol

      Public
      Visual stimulation protocol and metadata handler for flystim experiments
      Python
      •
      MIT License
      •0•0•3•0•Updated Jan 7, 2025Jan 7, 2025

    • neurite

      Public
      Neural networks toolbox focused on medical image analysis
      Python
      •
      Apache License 2.0
      •77•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • multistim

      Public
      server/client and gui for presenting audio and visual stimuli to fruit flies
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

    • L1L2-recurrent-feedback

      Public
      MATLAB
      •0•0•0•0•Updated Mar 22, 2024Mar 22, 2024

    • modules

      Public
      Custom `lmod` modules for use on Sherlock
      Lua
      •0•0•0•0•Updated Jan 29, 2024Jan 29, 2024

    • voxelmorph

      Public
      Unsupervised Learning for Image Registration
      Python
      •
      Apache License 2.0
      •643•0•0•0•Updated Jun 21, 2023Jun 21, 2023

    • pystrum

      Public
      A general library of python tools
      Python
      •13•0•0•0•Updated Jun 21, 2023Jun 21, 2023

    • brezovec_volition_2023

      Public
      Python
      •0•0•0•0•Updated Jun 9, 2023Jun 9, 2023

    • flyrpc

      Public
      Library for managing server/client interactions
      Python
      •
      Other
      •0•0•0•0•Updated Jun 2, 2023Jun 2, 2023

    • pijm

      Public
      PIJM is just matplotlib
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 3, 2022Sep 3, 2022

    • brainsss2

      Public
      refactor of the brainsss repo for 2-photon imaging analysis
      Jupyter Notebook
      •
      MIT License
      •0•0•10•0•Updated Aug 9, 2022Aug 9, 2022

    • ANTsPy

      Public
      Advanced Normalization Tools in Python
      Python
      •
      Apache License 2.0
      •180•0•0•0•Updated Jun 29, 2022Jun 29, 2022

    • multisensory-freezing

      Public
      python scripts for the ball rig with auditory and visual stimuli
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 27, 2021Dec 27, 2021

    • lightcrafter

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Nov 23, 2021Nov 23, 2021

    • pasna-acr-currbio2021

      Public
      Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Sp…
      drosophiladrosophila-melanogasterdrosophila-larvae
      drosophiladrosophila-melanogasterdrosophila-larvaedrosophila-brains
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 2, 2021Sep 2, 2021

    • fictrac

      Public
      A webcam-based method for tracking spherical motion and generating fictive animal paths.
      C++
      •
      Other
      •43•1•0•0•Updated Dec 15, 2020Dec 15, 2020

    • containers

      Public
      Commonly used containers and scripts to build them
      Makefile
      •0•0•0•0•Updated Oct 21, 2020Oct 21, 2020

    • goal-driven-ANNs

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 25, 2020Sep 25, 2020

    • dataflow

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Mar 10, 2020Mar 10, 2020

    • ipp-tools

      Public
      Collection of IPyParallel tools and helper scripts
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 29, 2017Jun 29, 2017
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