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RunBanksy() fails on large datasets: integer overflow in the lazy advisory message check

Status: Open.

#237 In satijalab/seurat-wrappers;

· ankushs0128 opened on Sep 11, 2026

Return AUC values from Presto 2

Status: Open.

#222 In satijalab/seurat-wrappers;

· GischD opened on Dec 3, 2025

Question about small niche clusters when analyzing multiple Xenium samples with BANKSY

Status: Open.

#219 In satijalab/seurat-wrappers;

· Clement-zcj opened on Aug 14, 2025

glmpca wrapper uses GetAssayData() which has been deprecated in SeuratObject 5.0.0

Status: Open.

#216 In satijalab/seurat-wrappers;

· lcolladotor opened on Jul 3, 2025

Issue with lazyloading

Status: Open.

#211 In satijalab/seurat-wrappers;

· HoranN18 opened on Feb 3, 2025

totally different integration result using scVIIntegration

Status: Open.

#210 In satijalab/seurat-wrappers;

· wanghf810501 opened on Jan 6, 2025

BANKSY wrapper concerns

Status: Open.

#208 In satijalab/seurat-wrappers;

· LPotter21 opened on Dec 20, 2024

[monocle3] Error in converting cell_data_set to Seurat object with function "as.Seurat()"

Status: Open.

#207 In satijalab/seurat-wrappers;

· jcshuy opened on Nov 26, 2024

Cannot install seurat wrappers or seuratdata

Status: Open.

#205 In satijalab/seurat-wrappers;

· hviolaphd opened on Nov 19, 2024

How to merge loom info into a Seurat object?

Status: Open.

#204 In satijalab/seurat-wrappers;

· AndreaYCT opened on Oct 28, 2024

ValueError: Expected more than 1 value per channel when training, got input size torch.Size([1, 128])

Status: Open.

#200 In satijalab/seurat-wrappers;

· zclecle2 opened on Sep 19, 2024

Allow specification of Python virtual environment

Status: Open.

#199 In satijalab/seurat-wrappers;

· Debilski opened on Sep 11, 2024