All pull requests

Pull requests

• chore: update docker/setup-buildx-action action to v4.4.1

  renovate-actions
  #172·seqeralabs-renovate[bot] opened Sep 7, 2026·

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• chore: update actions/deploy-pages action to v5.0.1

  renovate-actions
  #171·seqeralabs-renovate[bot] opened Sep 7, 2026·

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• chore: update docker/metadata-action action to v6.2.0

  renovate-actions
  #170·seqeralabs-renovate[bot] opened Aug 31, 2026·

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• chore: update docker/login-action action to v4.6.0

  renovate-actions
  #169·seqeralabs-renovate[bot] opened Aug 31, 2026·

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• chore: update docker/build-push-action action to v7.4.0

  renovate-actions
  #168·seqeralabs-renovate[bot] opened Aug 31, 2026·

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• chore: update dependency rust to 1.98

  renovate-actions
  #167·seqeralabs-renovate[bot] opened Aug 31, 2026·

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• feat(coverage): bigWig tracks from the alignment pass

  #166·BenjaminDEMAILLE opened Aug 29, 2026·

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• fix(deps): bump crossbeam-epoch for RUSTSEC-2026-0204

  #165·BenjaminDEMAILLE opened Aug 29, 2026·

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• feat(rna): Picard CollectRnaSeqMetrics

  #164·BenjaminDEMAILLE opened Aug 29, 2026·

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• feat(rna): RSeQC geneBody_coverage and read_GC

  #161·BenjaminDEMAILLE opened Aug 29, 2026·

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• feat(reads): raw FASTQ quality control

  #160·BenjaminDEMAILLE opened Aug 29, 2026·

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• feat(protein): mass spectrometry QC from mzML

  #159·BenjaminDEMAILLE opened Aug 28, 2026·

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• feat(protein): add the protein subcommand and its sequence mode

  #158·BenjaminDEMAILLE opened Aug 28, 2026·

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• feat(dna): Qualimap bamqc, plus the DNA documentation pages

  #156·BenjaminDEMAILLE opened Aug 28, 2026·

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• feat(dna): targeted mode, CollectHsMetrics and CollectGcBiasMetrics

  #155·BenjaminDEMAILLE opened Aug 28, 2026·

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• feat(dna): Picard CollectWgsMetrics and CollectInsertSizeMetrics

  #154·BenjaminDEMAILLE opened Aug 28, 2026·

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• feat: add the rustqc dna subcommand (depth of coverage, samtools, preseq)

  #153·BenjaminDEMAILLE opened Aug 28, 2026·

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• refactor: extract assay-agnostic analyses into src/common/

  #152·BenjaminDEMAILLE opened Aug 28, 2026·

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• chore: update actions/setup-node action to v6.5.0

  renovate-actions
  #150·seqeralabs-renovate[bot] opened Aug 24, 2026·

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• chore: update actions/checkout action to v6.1.0

  renovate-actions
  #149·seqeralabs-renovate[bot] opened Aug 24, 2026·

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• chore: update swatinem/rust-cache action to v2.9.2

  renovate-actions
  #148·seqeralabs-renovate[bot] opened Aug 24, 2026·

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• chore: update dtolnay/rust-toolchain digest to 02cb101

  renovate-actions
  #147·seqeralabs-renovate[bot] opened Aug 24, 2026·

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• ci: extend Dependabot to cargo, npm and docker

  #146·BenjaminDEMAILLE opened Aug 23, 2026·

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• Migrate CLI parsing from clap to usage-rs

  #145·edmundmiller opened Aug 23, 2026·

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• build(deps): update openssl-sys to 0.9.117 for OpenSSL 4 support

  #144·BenjaminDEMAILLE opened Aug 23, 2026·

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