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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.3k 278

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 512 114

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 411 72

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 432 77

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 362 53

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 216 16

Repositories

Showing 10 of 273 repositories
  • spatialdata-db-curation Public

    Structure to manage and formalise data submission for SpatialData-DB

    theislab/spatialdata-db-curation's past year of commit activity
    Python 0 0 1 0 Updated Sep 24, 2026
  • spatialdata-db Public
    theislab/spatialdata-db's past year of commit activity
    Jupyter Notebook 12 BSD-3-Clause 1 26 3 Updated Sep 24, 2026
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink's past year of commit activity
    Python 21 Apache-2.0 6 5 2 Updated Sep 24, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard's past year of commit activity
    HTML 8 0 1 0 Updated Sep 24, 2026
  • human-pancreas-cell-atlas Public

    HCA Pancreas Atlas Code Repo

    theislab/human-pancreas-cell-atlas's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 24, 2026
  • regvelo Public

    inferring regulatory cellular dynamics

    theislab/regvelo's past year of commit activity
    Python 192 BSD-3-Clause 20 0 0 Updated Sep 24, 2026
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy's past year of commit activity
    Python 362 Apache-2.0 53 16 5 Updated Sep 24, 2026
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata's past year of commit activity
    Python 15 Apache-2.0 7 7 4 Updated Sep 23, 2026
  • Chem-PerturBridge_analysis Public
    theislab/Chem-PerturBridge_analysis's past year of commit activity
    Jupyter Notebook 0 1 0 1 Updated Sep 23, 2026
  • scfit Public
    theislab/scfit's past year of commit activity
    Python 2 MIT 0 2 2 Updated Sep 23, 2026
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