cutandtag

Here are 6 public repositories matching this topic...

nf-core / cutandrun

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

workflow pipeline nextflow nf-core cutandrun-seq cutandrun cutandtag-seq cutandtag

Updated Sep 1, 2026
Nextflow

sebastian-gregoricchio / Rseb

Star

An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.

rna-seq r statistics genomics ngs data-visualization data-visualisation chip-seq atac-seq bedtools daily-tasks datamining qpcr deeptools qpcr-analysis cutandtag

Updated Sep 2, 2026
R

stjude-biohackathon / peakPeekeR

Star

Peak calling optimization via real time results assessment and interactive parameter adjustment.

shiny chip-seq atac-seq macs macs2 peak-calling cutandrun cutandtag genrich peak-callers sicer2

Updated Apr 29, 2022
R

adityamahadevaniyer / Cut-and-Tag

Star

Slurm scripts for analyzing bulk Cutandtag data

picard slurm bowtie2 fastqc deeptools trimmomatic cutandtag

Updated May 31, 2022
Shell

neurogenomics / tf-analysis-cuttag

Star

nanoCUT&TAG analysis of 17 transcription factors (TFs) in K562 human cells

analysis epigenomics motif-enrichment-analysis cutandtag r-analysis

Updated Jun 16, 2025
R

johnvusich / CnR

Star

Articles and Computational Methods for CUT&RUN and CUT&Tag

bioinformatics computational-biology next-generation-sequencing chromatin cutandrun cutandtag

Updated Oct 31, 2025

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