immunopeptidomics

Identify and quantify MHC eluted peptides from mass spectrometry raw data

DL model to predict HLA peptide presentation

Foundation model for MHC class I peptide binding prediction built on deep contrastive learning.

A pythonic library for analysing immunopeptidomic experiments

An optimized rescoring pipeline for immunopeptidomics data

PepQueryMHC: Rapid and Comprehensive Tumor Antigen Prioritization from Immunopeptidomics Data

Immunopeptidogenomics pipeline that builds a cryptic peptide database from RNA-seq and identifies non-canonical (cryptic) peptides in immunopeptidomics mass spectrometry data.

Peptides motif search tool and Source protein mappers

Personal site of Md. Hafijur Rahman: biomedical technology researcher (virology, vaccines, immunopeptidomics, protein machine learning).

R codes for processing MS data

Visualization of Immunopeptides Mapped to Source Proteins Across Multiple Samples

Reproducible sequence-only CNN benchmarking of HLA class-I immunopeptidomics, with analyses of evaluation confounds, negative-label construction, and dataset provenance.