Data ingest application for Monarch Initiative knowledge graph using Koza
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Sep 25, 2026 - Python
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kgx
Here are 6 public repositories matching this topic...
Tablassert turns biomedical spreadsheets (Excel, CSV, TSV) into knowledge graphs ready for NCATS Translator. Declare how your columns map to subject–predicate–object statements in YAML; Tablassert resolves free text to standard CURIEs, attaches provenance and statistical annotations, and emits KGX-compliant nodes and edges.
python bioinformatics dsl entity-resolution knowledge-graph ner yaml-configuration table-mining declarative-pipeline ncats-translator kgx data-quality-control agentic-ai tablassert
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Sep 24, 2026 - Python
AI-assisted automation for Critical Mineral Metabolism data curation using LinkML and KGX
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Jun 23, 2026 - Python
💬 Translator Standard APIs for the Knowledge Collaboratory (nanopublications)
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Mar 15, 2022 - Python
Drug Approvals Knowledge Provider: one reproducible pipeline that turns DailyMed, Drugs@FDA, and FAERS into Translator assertion tables, ready for Tablassert KGX modeling.
python go airflow bioinformatics knowledge-graph named-entity-recognition ncats-translator kgx tablassert gliner2 drug-approvals
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Sep 25, 2026 - Python
A BioLink/KGX export that refuses to assert what it could not detect, and stores the gap instead. Spec + reference implementation + conformance suite.
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Sep 25, 2026 - Python
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