rsem

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Pipeline for low-level RNA-Seq data processing

A pipeline for running rsem analysis on thousands of samples

RNAseq STAR pipeplien chr22

Docker to run RSEM for transcript quantification

A python package for working with inputs to and outputs from the toil-rnaseq pipeline

Metadata-driven downstream analysis (DESeq2, GSEA, GSVA, PCA) for RSEM gene-level results, as tables

Standard RNAseq analysis pipeline using snakemake.

RSEM task for RNA-seq workflow

RNASeq and Call Variants