serialem

Star

Here are 7 public repositories matching this topic...

instamatic-dev / pyserialem

Star

Python module to read/write SerialEM navigator files.

python navigator electron-microscopy serialem

Updated Jan 17, 2023
Python

azazellochg / MDCatch

Star

Fetch metadata from EPU / SerialEM and launch on-the-fly pre-processing

python cryo-em epu serialem qt6

Updated Jul 4, 2023
Python

tterada-utokyo / PyHoleFinder

Star

PyHoleFinder is a python program to find holes in holey carbon films on a cryo-electron microscope (cryo-EM) grid. This program can work with SerialEM.

cryo-em serialem

Updated Nov 13, 2020
Python

azazellochg / SerialEM

Star

Some scripts for SerialEM

serialem

Updated Nov 18, 2021

jruickoldt / CryoCrane

Star

a GUI for the analysis of cryo-EM screening data

cryo-em cryoem serialem single-particle-analysis cryoem-screening

Updated Sep 11, 2026
Python

azazellochg / perfectem

Star

Run TEM performance tests with SerialEM

python scripting serialem thermofisher

Updated Nov 6, 2025
Python

alexandrenpl / montage-blend-and-convert

Star

Blends SerialEM montages with IMOD and writes calibrated pyramidal OME-TIFF, plus BigDataViewer-compatible HDF5 and reduced-resolution derivatives for very large montages. GUI and standalone Windows executable.

python hdf5 electron-microscopy microscopy ome-tiff image-conversion imod bioimage-analysis bigdataviewer serialem

Updated Sep 21, 2026
Python

Add this topic to your repo

To associate your repository with the serialem topic, visit your repo's landing page and select "manage topics."

Learn more