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RELAX: a seeded run reproduces only with CPU=1 in 2.5.101; the command-line seed had no effect through 2.5.100

core

enhancement

Status: Open.

#2024 In veg/hyphy;

· sunsungkim04-sys opened on Sep 23, 2026

BUSTED-PH v2.0: comparative test is label-order dependent

bug

hbl

methodology/applications

Status: Open.

#2020 In veg/hyphy;

· tsackton opened on Sep 22, 2026

GARD (MPI) hangs at exit when site-to-site rate variation (GDD) is enabled — analysis completes, process never terminates (2.5.98)

Status: Open.

#2016 In veg/hyphy;

· stevenweaver opened on Sep 17, 2026

GARD _LikelihoodFunction::GradientLocateTheBump error

Status: Open.

#2014 In veg/hyphy;

· shjenkins94 opened on Sep 3, 2026

GARD outputs inconsistent coordinates across files

no-issue-activity

Status: Open.

#2010 In veg/hyphy;

· Rutford-TANG opened on Jul 23, 2026

Clarify branch-level Rate Distributions format in aBSREL JSON ([omega, proportion] vs [dN, dS])

no-issue-activity

Status: Open.

#2009 In veg/hyphy;

· FKazuki0801 opened on Jul 14, 2026

Question about using RELAX-joint results for estimating K and confidence intervals

no-issue-activity

Status: Open.

#2006 In veg/hyphy;

· kezhengyi1216-bit opened on Jul 2, 2026