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@PalMuc Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-University Munich

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    Repositories list

    32 repositories

    • diacarnus

      Public
      LMU-TAU Diacarnus Project
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 5, 2026Oct 5, 2026

    • RedSeaHaploscleridaPhylosymbiosis

      Public
      Red Sea Haplosclerida Phylosymbiosis
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 10, 2026Aug 10, 2026

    • SpongeMSCSD

      Public
      MSC-Based Species Delimitation in Sponges
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 3, 2026Aug 3, 2026

    • congeneric_synteny

      Public
      analysis of synteny across animals
      comparative-genomicssyntenyspeciation
      comparative-genomicssyntenyspeciation
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 26, 2026Jun 26, 2026

    • Barcoding-inferred-Indo-Pacific-demosponge-biodiversity

      Public
      Barcoding-inferred biodiversity of shallow-water Indo-Pacific demosponges
      R
      •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

    • MediterraneanTethyaMicrobiomes

      Public
      R
      •0•0•0•0•Updated Nov 12, 2025Nov 12, 2025

    • HaploscleridMuseomics

      Public
      Repository storing files used for the Haplosclerid Museomics project
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 28, 2025Aug 28, 2025

    • CalcBiomin

      Public
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Aug 27, 2025Aug 27, 2025

    • Tethya-MuseOMICS

      Public
      0•0•0•0•Updated Jun 22, 2025Jun 22, 2025

    • HaploTC

      Public
      Target Capturing Genome-wide Loci in Marine Haplosclerids
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Aug 28, 2024Aug 28, 2024

    • 2Tethya_genomes

      Public
      The genome of the contractile demosponge Tethya wilhelma
      genomegenome-annotationgenome-analysis
      genomegenome-annotationgenome-analysisgenome-assemblymetazoaporiferasponges
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 24, 2024Jun 24, 2024

    • beauty_in_the_beast

      Public
      Raku
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 20, 2024May 20, 2024

    • CalciteSea

      Public
      Data repository for Conci N., Griesshaber E., Rivera-Vicéns R., Schmahl W., Vargas S. and Wӧrheide G (2022) Molecular and mineral responses of corals grown unde…
      coralbiomineralizationscleractinia
      coralbiomineralizationscleractiniaoctocorallia
      0•0•0•0•Updated Feb 3, 2024Feb 3, 2024

    • Aphrocallistes_vastus_genome

      Public
      Aphrocallistes vastus genome
      genomegenome-annotationgenome-analysis
      genomegenome-annotationgenome-analysismetazoabiomineralizationporifera
      Shell
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•1•0•0•Updated Oct 12, 2023Oct 12, 2023

    • SONNE_Hexactinellida

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 20, 2023Jul 20, 2023

    • triangulation

      Public
      Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
      bash-scriptproteomegenomes
      bash-scriptproteomegenomesphylogenyhomology-searchorthologygenomes-comparisonrevbayesfull-genome
      R
      •
      GNU General Public License v3.0
      •0•5•0•0•Updated May 4, 2023May 4, 2023

    • KeratoseMuseOMICS

      Public
      Data for Agne et al. Keratose sponge MuseOMICS: setting reference points in dictyoceratid demosponge phylogeny
      0•0•0•0•Updated Aug 17, 2022Aug 17, 2022

    • TransPi

      Public
      TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
      rna-seqannotationnextflow
      rna-seqannotationnextflowassemblytranscriptomicsdenovo-assemblyrna-seq-pipelinenextflow-pipelinenon-model-species
      Nextflow
      •
      Other
      •19•28•26•0•Updated Jan 2, 2022Jan 2, 2022

    • TransPi_paper

      Public
      TransPi - Supplementary files
      HTML
      •0•0•0•0•Updated Dec 13, 2021Dec 13, 2021

    • PlasticsSponge

      Public
      Sponges as bioindicators for microparticulate pollutants
      R
      •1•0•0•1•Updated Jun 7, 2020Jun 7, 2020

    • PlasticsBacteria

      Public
      R
      •1•0•0•0•Updated Feb 11, 2020Feb 11, 2020

    • Soft-Sponges-Tricky-Tree

      Public
      Data sets of "Soft Sponges with Tricky Tree: On the Phylogeny of Dictyoceratid Sponges" by Erpenbeck D, Galitz A,Ekins M, Cook SdC, van Soest RWM, Hooper JNA, a…
      0•0•0•0•Updated Dec 10, 2019Dec 10, 2019

    • Molecular-biodiversity-of-Red-Sea-demosponges.

      Public
      Data set repository of Erpenbeck et al. (2016), Marine Pollution Bulletin 105:507-515. To be used under the Creative Commons CC-BY-NC-ND license, please with qu…
      0•0•0•0•Updated Dec 10, 2019Dec 10, 2019

    • A-short-LSU-rRNA-fragment-as-a-standard-marker-for-integrative-taxonomy-in-calcareous-sponges

      Public
      Alignment, secondary structure files, trees & more of Voigt & Wörheide (2016) Organisms Diversity & Evolution 16:53-64. To be used under the Creative Commons CC…
      0•0•0•0•Updated Dec 10, 2019Dec 10, 2019

    • Spongillida_Minimalist_Barcodes

      Public
      Repository for: Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida. Authors: Dirk Erpenbeck, Markus Steiner, Astrid Schust…
      0•0•0•0•Updated Jan 15, 2019Jan 15, 2019

    • mitoclocks2018

      Public
      Roff
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 30, 2018Jul 30, 2018

    • Montipora_digitata_resources

      Public
      Companion repository for González-Pech et al.
      R
      •0•0•0•0•Updated Jun 22, 2017Jun 22, 2017

    • bio-phyta

      Public
      Ruby
      •
      GNU Lesser General Public License v3.0
      •1•2•1•0•Updated Dec 7, 2011Dec 7, 2011

    • Kingdom-Assignment

      Public
      A Ruby gem to parse BLASTplus XML output and annotate higher rank taxonomy
      Ruby
      •
      GNU Lesser General Public License v3.0
      •0•1•0•0•Updated Oct 17, 2011Oct 17, 2011

    • Annotate-GFF

      Public
      Add annotations to a GFF file
      Ruby
      •
      GNU Lesser General Public License v3.0
      •1•3•0•0•Updated Jun 7, 2011Jun 7, 2011
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