Repositories list

• genome_changelog

  Public
  Python

  •

  MIT License

  •11 fork in pombase/genome_changelog•22 stars in pombase/genome_changelog•11 issue in pombase/genome_changelog•00 pull requests in pombase/genome_changelog•Updated Oct 25, 2026Oct 25, 2026

• pombase-chado-json

  Public
  Read a PomBase Chado database and write it as JSON

  Rust

  •

  MIT License

  •11 fork in pombase/pombase-chado-json•11 star in pombase/pombase-chado-json•00 issues in pombase/pombase-chado-json•00 pull requests in pombase/pombase-chado-json•Updated Oct 24, 2026Oct 24, 2026

• website

  Public template
  PomBase website code

  fission-yeastpombase

  fission-yeastpombase

  TypeScript

  •

  MIT License

  •11 fork in pombase/website•66 stars in pombase/website•9090 issues in pombase/website•11 pull request in pombase/website•Updated Oct 23, 2026Oct 23, 2026

• pombase-config

  Public
  Shared configuration for PomBase projects

  Perl

  •22 forks in pombase/pombase-config•00 stars in pombase/pombase-config•44 issues in pombase/pombase-config•00 pull requests in pombase/pombase-config•Updated Oct 22, 2026Oct 22, 2026

• canto

  Public
  The PomBase community curation tool

  JavaScript

  •

  Other

  •88 forks in pombase/canto•1919 stars in pombase/canto•181181 issues in pombase/canto•11 pull request in pombase/canto•Updated Oct 20, 2026Oct 20, 2026

• fypo

  Public
  Fission Yeast Phenotype Ontology

  phenotypesobofoundryfission-yeast+ 1

  phenotypesobofoundryfission-yeastpombase

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •44 forks in pombase/fypo•1717 stars in pombase/fypo•176176 issues in pombase/fypo•22 pull requests in pombase/fypo•Updated Oct 19, 2026Oct 19, 2026

• pombase-legacy

  Public
  Code for handling legacy PomBase data

  Perl

  •

  MIT License

  •11 fork in pombase/pombase-legacy•00 stars in pombase/pombase-legacy•00 issues in pombase/pombase-legacy•00 pull requests in pombase/pombase-legacy•Updated Oct 18, 2026Oct 18, 2026

• pombase-chado

  Public
  PomBase code for accessing Chado

  Perl

  •

  MIT License

  •33 forks in pombase/pombase-chado•55 stars in pombase/pombase-chado•4040 issues in pombase/pombase-chado•00 pull requests in pombase/pombase-chado•Updated Oct 18, 2026Oct 18, 2026

• pombase-python-web

  Public
  Python web code for the PomBase project

  HTML

  •11 fork in pombase/pombase-python-web•00 stars in pombase/pombase-python-web•00 issues in pombase/pombase-python-web•00 pull requests in pombase/pombase-python-web•Updated Oct 15, 2026Oct 15, 2026

• pombase-gocam-tool

  Public
  PomBase tool for processing GO-CAM models

  Rust

  •

  MIT License

  •00 forks in pombase/pombase-gocam-tool•00 stars in pombase/pombase-gocam-tool•00 issues in pombase/pombase-gocam-tool•00 pull requests in pombase/pombase-gocam-tool•Updated Sep 28, 2026Sep 28, 2026

• pombase-gocam-process

  Public
  Rust

  •

  MIT License

  •00 forks in pombase/pombase-gocam-process•00 stars in pombase/pombase-gocam-process•00 issues in pombase/pombase-gocam-process•00 pull requests in pombase/pombase-gocam-process•Updated Sep 28, 2026Sep 28, 2026

• pombase-gocam

  Public
  GO-CAM JSON model parsing code

  Rust

  •

  MIT License

  •11 fork in pombase/pombase-gocam•00 stars in pombase/pombase-gocam•1919 issues in pombase/pombase-gocam•00 pull requests in pombase/pombase-gocam•Updated Sep 28, 2026Sep 28, 2026

• pombase-fly-query

  Public
  Shell

  •00 forks in pombase/pombase-fly-query•00 stars in pombase/pombase-fly-query•33 issues in pombase/pombase-fly-query•00 pull requests in pombase/pombase-fly-query•Updated Sep 23, 2026Sep 23, 2026

• pombase-historic-go-stats

  Public
  PomBase historic GAF files

  Python

  •00 forks in pombase/pombase-historic-go-stats•00 stars in pombase/pombase-historic-go-stats•00 issues in pombase/pombase-historic-go-stats•00 pull requests in pombase/pombase-historic-go-stats•Updated Sep 9, 2026Sep 9, 2026

• pombase-domain-process

  Public
  Extract the InterPro data for the PomBase proteins and write as JSON

  Rust

  •00 forks in pombase/pombase-domain-process•11 star in pombase/pombase-domain-process•00 issues in pombase/pombase-domain-process•00 pull requests in pombase/pombase-domain-process•Updated Aug 9, 2026Aug 9, 2026

• pombase-gocam-server

  Public
  Rust

  •00 forks in pombase/pombase-gocam-server•00 stars in pombase/pombase-gocam-server•00 issues in pombase/pombase-gocam-server•00 pull requests in pombase/pombase-gocam-server•Updated Jul 30, 2026Jul 30, 2026

• allele_qc

  Public
  Quality control for PomBase alleles

  Python

  •

  MIT License

  •11 fork in pombase/allele_qc•22 stars in pombase/allele_qc•1111 issues in pombase/allele_qc•00 pull requests in pombase/allele_qc•Updated Jun 14, 2026Jun 14, 2026

• relation-graph

  Public
  Materialize OWL existential relations

  Scala

  •

  MIT License

  •44 forks in pombase/relation-graph•00 stars in pombase/relation-graph•00 issues in pombase/relation-graph•00 pull requests in pombase/relation-graph•Updated Jun 8, 2026Jun 8, 2026

• canto_tutorial

  Public
  A static site with canto documentation for users to get started with Canto.

  Python

  •

  MIT License

  •00 forks in pombase/canto_tutorial•22 stars in pombase/canto_tutorial•00 issues in pombase/canto_tutorial•00 pull requests in pombase/canto_tutorial•Updated Jun 3, 2026Jun 3, 2026

• web-components

  Public
  Gene Ontology web component library

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork in pombase/web-components•00 stars in pombase/web-components•00 issues in pombase/web-components•00 pull requests in pombase/web-components•Updated May 21, 2026May 21, 2026

• wc-gocam-viz

  Public
  Web component to visualize GO-CAMs

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •22 forks in pombase/wc-gocam-viz•00 stars in pombase/wc-gocam-viz•00 issues in pombase/wc-gocam-viz•00 pull requests in pombase/wc-gocam-viz•Updated Dec 4, 2025Dec 4, 2025

• chobo

  Public
  Code for loading OBO files into a Chado database using COPY (prototype)

  Perl

  •11 fork in pombase/chobo•00 stars in pombase/chobo•66 issues in pombase/chobo•00 pull requests in pombase/chobo•Updated Aug 19, 2025Aug 19, 2025

• pombase-gocam-curation

  Public
  GO-CAM curation issues

  00 forks in pombase/pombase-gocam-curation•00 stars in pombase/pombase-gocam-curation•2727 issues in pombase/pombase-gocam-curation•00 pull requests in pombase/pombase-gocam-curation•Updated Apr 16, 2025Apr 16, 2025

• curation

  Public
  PomBase curation

  biocurationfission-yeastpombase

  biocurationfission-yeastpombase

  00 forks in pombase/curation•77 stars in pombase/curation•241241 issues in pombase/curation•00 pull requests in pombase/curation•Updated Jan 28, 2025Jan 28, 2025

• mitochondrion

  Public
  00 forks in pombase/mitochondrion•00 stars in pombase/mitochondrion•2727 issues in pombase/mitochondrion•00 pull requests in pombase/mitochondrion•Updated Oct 16, 2024Oct 16, 2024

• pombase-python

  Public
  PomBase Python code

  Python

  •

  MIT License

  •00 forks in pombase/pombase-python•00 stars in pombase/pombase-python•00 issues in pombase/pombase-python•00 pull requests in pombase/pombase-python•Updated Nov 1, 2023Nov 1, 2023

• phenomics_paper_HTP2

  Public
  Second phenomics paper PHAF re-formatting

  HTML

  •

  MIT License

  •00 forks in pombase/phenomics_paper_HTP2•00 stars in pombase/phenomics_paper_HTP2•00 issues in pombase/phenomics_paper_HTP2•00 pull requests in pombase/phenomics_paper_HTP2•Updated Oct 9, 2023Oct 9, 2023

• all_previous_sgd_peptide_sequences

  Public
  A simple set of scripts to generate a file with all old sgd protein sequences

  Python

  •

  MIT License

  •00 forks in pombase/all_previous_sgd_peptide_sequences•00 stars in pombase/all_previous_sgd_peptide_sequences•00 issues in pombase/all_previous_sgd_peptide_sequences•00 pull requests in pombase/all_previous_sgd_peptide_sequences•Updated Aug 28, 2023Aug 28, 2023

• runoak_on_pombase

  Public
  runoak on PomBase data

  Shell

  •

  MIT License

  •00 forks in pombase/runoak_on_pombase•11 star in pombase/runoak_on_pombase•00 issues in pombase/runoak_on_pombase•00 pull requests in pombase/runoak_on_pombase•Updated Aug 4, 2023Aug 4, 2023

• allele_gene_variant_features_regex

  Public
  Regular expression patterns for alllele variant features as described in the publication

  Python

  •

  MIT License

  •00 forks in pombase/allele_gene_variant_features_regex•00 stars in pombase/allele_gene_variant_features_regex•00 issues in pombase/allele_gene_variant_features_regex•00 pull requests in pombase/allele_gene_variant_features_regex•Updated Jul 12, 2023Jul 12, 2023