An R package to infer and analyze synteny networks from protein sequences
a versatile toolkit for processing and analyzing diverse types of sequence data
An R package to perform systematic quality checks on comparative genomics analyses
A dashboard to explore and download the duplicated gene repertoire in eukaryote species
An expert-guided workflow integrating D-statistic screening and BPP-based Bayesian model testing to reconstruct reticulate evolutionary histories.
split-based gene tree–species tree reconciliation for robust branch mapping under missing taxa
A tool that enables microbial genes to be linked to environmental variables (e.g., health/disease, geography, experimental perturbations) while correcting for the effect of phylogeny
Code and data associated with the paper "doubletrouble: an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications"
Machine Learning to predict functional relationships of uncharacterized proteins through orthology and co-evolution information.
Forward genetic simulations to estimate genetic load in tetraploids and diploids
UC Berkeley IB 161 (Population and Evolutionary Genetics) Spring 2021
Website for the Ewing Group.
Research projects conducted at the GeneMAP Research Center
Analysis code for the whale shark genome project
Mapping And Prediction of Shared Elements in Alignments
R Shiny application for browsing Acomys cahirinus positive selection signals in protein-coding-regions
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