A MATLAB GUI for live cell scanning microscopy analysis
NeuronID is an automatic toolkit for processing two-photon calcium imaging data.
cell detection in calcium imaging recordings
GUI-equipped, U-Net pipeline for axon ROI segmentation in two-photon imaging
The COMBO Window is a chronic cranial implant for mice, designed for long-term, multimodal neural recordings.
Registration of cells across sessions.
This repo contains the reorganised research codebase for LC-CA1 electrophysiology, behaviour, two-photon imaging, optogenetics, and computational modelling
Accompanying repository to Nature Protocols paper: "Drug self-administration in head-fixed mice" by Elizabeth M. Doncheck et al. (2026).
Read Femtonics .mesc two-photon recordings, in the units the native reader shows
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Jérôme Lecoq: OpenScope, systems neuroscience, large-scale neurophysiology, and open science.
Open CC-BY titanium headbar (head-fixation headplate) for in-vivo neuroscience — free STEP model, machined in titanium by bxtlab.
🎥🐁 Scripts for analysis and visualization of free-moving mouse trajectories
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Learn two-photon microscopy with simple experiments
Python tools and a notebook for quality control of two-photon calcium-imaging movies.
Metadata and release support for OpenScope datasets published in NWB format on DANDI.
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